Lead Bioinformatician/Engineer (Pipelines and Infrastructure)

Natera
United States
Workplace: RemoteFull timeUSD 130,900 - 163,600 annuallyFunction: Administration & Executive AssistanceExperience: 4+ yearsSkills: ["Testing","Debugging","Written communication","Documentation","Investigation"]

Own pipeline and infrastructure engineering for a research informatics team focused on cell-free DNA (cfDNA) screening. Maintain and improve WDL workflows on AWS Batch and AWS HealthOmics, transition toward Nextflow, and manage AWS infrastructure as code with Terraform. Build testing, monitoring, and alerting for reliable, reproducible compute, while developing internal tooling that enables scientists to run and debug pipelines end to end.

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FursaFursa
Natera
Natera
13 hours ago

Lead Bioinformatician/Engineer (Pipelines and Infrastructure)

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Source: Company careers pageValidated by: Fursa AI
Last checked: 13 hours agoStatus: Live

Job Summary

Own pipeline and infrastructure engineering for a research informatics team focused on cell-free DNA (cfDNA) screening. Maintain and improve WDL workflows on AWS Batch and AWS HealthOmics, transition toward Nextflow, and manage AWS infrastructure as code with Terraform. Build testing, monitoring, and alerting for reliable, reproducible compute, while developing internal tooling that enables scientists to run and debug pipelines end to end.
Location: United States
Workplace: Remote
Employment Type: Full time
Job Function: Administration & Executive Assistance
Seniority: Mid level

Key Responsibilities

  • •Maintain and improve WDL workflows on AWS Batch and AWS HealthOmics, owning how workflows run on shared tooling and infrastructure.
  • •Transition workflows toward Nextflow while ensuring reliability, reproducibility, and observability across compute environments.
  • •Own AWS infrastructure as code in Terraform, building testing, monitoring, and alerting to surface failures before scientists are impacted.
  • •Develop and harden internal tooling that reduces manual work and supports triage of production issues.
  • •Partner with science leads and production teams to help methods reach production pipelines and support handoff readiness.

Pay and Benefits

Salary: USD 130,900 - 163,600 annually
Perks:Health InsuranceDentalVisionLife InsuranceDisability Insurance401kParental LeaveCommuter Benefits

Key Requirements

  • •4+ years of software or pipeline engineering experience, ideally in life sciences, sequencing, or production-adjacent settings.
  • •Demonstrated end-to-end ownership of a system operating in production, not just building an initial version.
  • •Strong Python and software engineering fundamentals with testing and debugging practice.
  • •Experience with workflow systems such as Snakemake, CWL, WDL, Nextflow, or similar.
  • •Real cloud experience, ideally AWS, including managing infrastructure as code with Terraform (or equivalent).
Experience:4+ yearsLife sciencesSequencing
Skills:TestingDebuggingWritten communicationDocumentationInvestigation
Tech Stack:PythonWDLNextflowSnakemakeCWLAWS BatchAWS HealthOmicsTerraformLinuxContainersVersion control

Company Brief

Natera
Develops and commercializes genetic testing and diagnostics focused on reproductive health, oncology, and organ transplant to inform clinical decision-making and improve patient outcomes.
Industry: Diagnostics
Company Size: Enterprise (1,001+ employees)
Revenue: USD 500M to 1B
Growth: Public Company
Valuation: Public Company (Market Cap in USD)
Funding: IPO / Publicly Listed
Headquarters: San Carlos, United States
Founded: 2004
WebsiteLinkedIn